org.openmrs.api.db.hibernate

Class HibernateConceptDAO

java.lang.Object

org.openmrs.api.db.hibernate.HibernateConceptDAO

All Implemented Interfaces:

ConceptDAO

public class HibernateConceptDAO
extends java.lang.Object
implements ConceptDAO

The Hibernate class for Concepts, Drugs, and related classes.

Use the ConceptService to access these methods

See Also:

ConceptService

Field Summary

Fields

Modifier and Type	Field and Description
protected org.apache.commons.logging.Log	log

Constructor Summary

Constructors

Constructor and Description
HibernateConceptDAO()

Method Summary

Modifier and Type	Method and Description
java.util.Iterator<Concept>	conceptIterator()
void	deleteConceptMapType(ConceptMapType conceptMapType)
void	deleteConceptReferenceTerm(ConceptReferenceTerm conceptReferenceTerm)
ConceptSource	deleteConceptSource(ConceptSource cs)
void	deleteConceptStopWord(java.lang.Integer conceptStopWordId)
java.util.List<ConceptClass>	getAllConceptClasses(boolean includeRetired)
java.util.List<ConceptDatatype>	getAllConceptDatatypes(boolean includeRetired)
java.util.List<ConceptNameTag>	getAllConceptNameTags()
java.util.List<ConceptProposal>	getAllConceptProposals(boolean includeCompleted)
java.util.List<Concept>	getAllConcepts(java.lang.String sortBy, boolean asc, boolean includeRetired)
java.util.List<ConceptSource>	getAllConceptSources()
java.util.List<ConceptStopWord>	getAllConceptStopWords()
Concept	getConcept(java.lang.Integer conceptId)
ConceptAnswer	getConceptAnswer(java.lang.Integer conceptAnswerId)
ConceptAnswer	getConceptAnswerByUuid(java.lang.String uuid)
Concept	getConceptByUuid(java.lang.String uuid) Auto generated method comment
ConceptClass	getConceptClass(java.lang.Integer i)
ConceptClass	getConceptClassByUuid(java.lang.String uuid) Auto generated method comment
java.util.List<ConceptClass>	getConceptClasses(java.lang.String name)
ConceptComplex	getConceptComplex(java.lang.Integer conceptId) Get a ConceptComplex.
ConceptDatatype	getConceptDatatype(java.lang.Integer i)
ConceptDatatype	getConceptDatatypeByName(java.lang.String name)
ConceptDatatype	getConceptDatatypeByUuid(java.lang.String uuid) Auto generated method comment
java.util.List<ConceptDatatype>	getConceptDatatypes(java.lang.String name)
ConceptDescription	getConceptDescriptionByUuid(java.lang.String uuid)
java.util.List<ConceptMap>	getConceptMapsBySource(ConceptSource conceptSource)
ConceptMapType	getConceptMapType(java.lang.Integer conceptMapTypeId)
ConceptMapType	getConceptMapTypeByName(java.lang.String name)
ConceptMapType	getConceptMapTypeByUuid(java.lang.String uuid)
java.util.List<ConceptMapType>	getConceptMapTypes(boolean includeRetired, boolean includeHidden)
ConceptName	getConceptName(java.lang.Integer conceptNameId)
ConceptName	getConceptNameByUuid(java.lang.String uuid)
ConceptNameTag	getConceptNameTag(java.lang.Integer i)
ConceptNameTag	getConceptNameTagByName(java.lang.String name)
ConceptNameTag	getConceptNameTagByUuid(java.lang.String uuid)
ConceptNumeric	getConceptNumeric(java.lang.Integer i)
ConceptNumeric	getConceptNumericByUuid(java.lang.String uuid) Auto generated method comment
ConceptProposal	getConceptProposal(java.lang.Integer conceptProposalId)
ConceptProposal	getConceptProposalByUuid(java.lang.String uuid) Auto generated method comment
java.util.List<ConceptProposal>	getConceptProposals(java.lang.String text)
ConceptReferenceTerm	getConceptReferenceTerm(java.lang.Integer conceptReferenceTermId)
ConceptReferenceTerm	getConceptReferenceTermByCode(java.lang.String code, ConceptSource conceptSource)
ConceptReferenceTerm	getConceptReferenceTermByName(java.lang.String name, ConceptSource conceptSource)
ConceptReferenceTerm	getConceptReferenceTermByUuid(java.lang.String uuid)
java.util.List<ConceptReferenceTerm>	getConceptReferenceTerms(boolean includeRetired)
java.util.List<ConceptReferenceTerm>	getConceptReferenceTerms(java.lang.String query, ConceptSource conceptSource, java.lang.Integer start, java.lang.Integer length, boolean includeRetired)
java.util.List<ConceptReferenceTerm>	getConceptReferenceTermsBySource(ConceptSource conceptSource)
java.util.List<ConceptSearchResult>	getConcepts(java.lang.String phrase, java.util.List<java.util.Locale> locales, boolean includeRetired, java.util.List<ConceptClass> requireClasses, java.util.List<ConceptClass> excludeClasses, java.util.List<ConceptDatatype> requireDatatypes, java.util.List<ConceptDatatype> excludeDatatypes, Concept answersToConcept, java.lang.Integer start, java.lang.Integer size)
java.util.List<Concept>	getConcepts(java.lang.String name, java.util.Locale loc, boolean searchOnPhrase, java.util.List<ConceptClass> classes, java.util.List<ConceptDatatype> datatypes) Returns a list of concepts based on the search criteria
java.util.List<Concept>	getConceptsByAnswer(Concept concept) gets questions for the given answer concept
java.util.List<Concept>	getConceptsByMapping(java.lang.String code, java.lang.String sourceName, boolean includeRetired)
java.util.List<Concept>	getConceptsByName(java.lang.String name, java.util.Locale locale, java.lang.Boolean exactLocale)
ConceptSet	getConceptSetByUuid(java.lang.String uuid)
ConceptSetDerived	getConceptSetDerivedByUuid(java.lang.String uuid)
java.util.List<ConceptSet>	getConceptSetsByConcept(Concept concept)
ConceptSource	getConceptSource(java.lang.Integer conceptSourceId)
ConceptSource	getConceptSourceByName(java.lang.String conceptSourceName)
ConceptSource	getConceptSourceByUuid(java.lang.String uuid)
java.util.List<java.lang.String>	getConceptStopWords(java.util.Locale locale)
java.util.List<Concept>	getConceptsWithDrugsInFormulary()
java.util.Map<java.lang.Integer,java.lang.String>	getConceptUuids()
ConceptWord	getConceptWordByUuid(java.lang.String uuid)
java.util.List<ConceptWord>	getConceptWords(java.lang.String phrase, java.util.List<java.util.Locale> locales, boolean includeRetired, java.util.List<ConceptClass> requireClasses, java.util.List<ConceptClass> excludeClasses, java.util.List<ConceptDatatype> requireDatatypes, java.util.List<ConceptDatatype> excludeDatatypes, Concept answersToConcept, java.lang.Integer start, java.lang.Integer size)
java.lang.Long	getCountOfConceptReferenceTerms(java.lang.String query, ConceptSource conceptSource, boolean includeRetired)
java.lang.Long	getCountOfConceptWords(java.lang.String phrase, java.util.List<java.util.Locale> locales, boolean includeRetired, java.util.List<ConceptClass> requireClasses, java.util.List<ConceptClass> excludeClasses, java.util.List<ConceptDatatype> requireDatatypes, java.util.List<ConceptDatatype> excludeDatatypes, Concept answersToConcept, boolean forUniqueConcepts) Get the count of matching conceptWords
java.lang.Long	getCountOfDrugs(java.lang.String drugName, Concept concept, boolean searchOnPhrase, boolean searchDrugConceptNames, boolean includeRetired)
ConceptMapType	getDefaultConceptMapType() It is in the DAO, because it must be done in the MANUAL flush mode to prevent premature flushes in ConceptService.saveConcept(Concept).
Drug	getDrug(java.lang.Integer drugId)
Drug	getDrugByMapping(java.lang.String code, ConceptSource conceptSource, java.util.Collection<ConceptMapType> withAnyOfTheseTypesOrOrderOfPreference)
Drug	getDrugByUuid(java.lang.String uuid) Auto generated method comment
DrugIngredient	getDrugIngredientByUuid(java.lang.String uuid)
java.util.List<Drug>	getDrugs(java.lang.String phrase)
java.util.List<Drug>	getDrugs(java.lang.String drugName, Concept concept, boolean includeRetired) DAO for retrieving a list of drugs based on the following criteria
java.util.List<Drug>	getDrugs(java.lang.String drugName, Concept concept, boolean searchOnPhrase, boolean searchDrugConceptNames, boolean includeRetired, java.lang.Integer start, java.lang.Integer length)
java.util.List<Drug>	getDrugs(java.lang.String searchPhrase, java.util.Locale locale, boolean exactLocale, boolean includeRetired)
java.util.List<Drug>	getDrugsByMapping(java.lang.String code, ConceptSource conceptSource, java.util.Collection<ConceptMapType> withAnyOfTheseTypes, boolean includeRetired)
java.util.Set<java.util.Locale>	getLocalesOfConceptNames()
java.lang.Integer	getMaxConceptId()
java.lang.Integer	getMinConceptId()
Concept	getNextConcept(Concept c)
Concept	getPrevConcept(Concept c)
java.util.List<Concept>	getProposedConcepts(java.lang.String text)
java.util.List<ConceptReferenceTermMap>	getReferenceTermMappingsTo(ConceptReferenceTerm term)
ConceptDatatype	getSavedConceptDatatype(Concept concept) Gets the value of conceptDatatype currently saved in the database for the given concept, bypassing any caches.
ConceptName	getSavedConceptName(ConceptName conceptName) Gets the persisted copy of the conceptName currently saved in the database for the given conceptName, bypassing any caches.
java.util.List<ConceptSet>	getSetsContainingConcept(Concept concept)
boolean	isConceptMapTypeInUse(ConceptMapType mapType) Checks if there are any ConceptReferenceTermMaps or ConceptMaps using the specified mapType
boolean	isConceptReferenceTermInUse(ConceptReferenceTerm term) Checks if there are any ConceptReferenceTermMaps or ConceptMaps using the specified term
void	purgeConcept(Concept concept)
void	purgeConceptClass(ConceptClass cc)
void	purgeConceptDatatype(ConceptDatatype cd)
void	purgeConceptProposal(ConceptProposal cp)
void	purgeDrug(Drug drug)
Concept	saveConcept(Concept concept)
ConceptClass	saveConceptClass(ConceptClass cc)
ConceptDatatype	saveConceptDatatype(ConceptDatatype cd)
ConceptMapType	saveConceptMapType(ConceptMapType conceptMapType)
ConceptNameTag	saveConceptNameTag(ConceptNameTag nameTag)
ConceptProposal	saveConceptProposal(ConceptProposal cp)
ConceptReferenceTerm	saveConceptReferenceTerm(ConceptReferenceTerm conceptReferenceTerm)
ConceptSource	saveConceptSource(ConceptSource conceptSource)
ConceptStopWord	saveConceptStopWord(ConceptStopWord conceptStopWord)
Drug	saveDrug(Drug drug)
void	setSessionFactory(org.hibernate.SessionFactory sessionFactory) Sets the session factory
void	updateConceptSetDerived()
void	updateConceptSetDerived(Concept concept)
void	updateConceptWord(Concept concept)
java.lang.Double	weighConceptWord(ConceptWord word) Computes and returns the weight of a conceptWord.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected final org.apache.commons.logging.Log log

Constructor Detail

HibernateConceptDAO

public HibernateConceptDAO()

Method Detail

setSessionFactory

public void setSessionFactory(org.hibernate.SessionFactory sessionFactory)

Sets the session factory

Parameters:

sessionFactory -

getConceptComplex

public ConceptComplex getConceptComplex(java.lang.Integer conceptId)

Description copied from interface: ConceptDAO

Get a ConceptComplex. The Concept.getDatatype() is "Complex" and the Concept.getHandler() is the class name for the ComplexObsHandler key associated with this ConceptComplex.

Specified by:

getConceptComplex in interface ConceptDAO

Returns:

the ConceptComplex

See Also:

ConceptDAO.getConceptComplex(java.lang.Integer)

saveConcept

public Concept saveConcept(Concept concept)
                    throws DAOException

Specified by:

saveConcept in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConcept(org.openmrs.Concept)

purgeConcept

public void purgeConcept(Concept concept)
                  throws DAOException

Specified by:

purgeConcept in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.purgeConcept(org.openmrs.Concept)

getConcept

public Concept getConcept(java.lang.Integer conceptId)
                   throws DAOException

Specified by:

getConcept in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConcept(java.lang.Integer)

getConceptName

public ConceptName getConceptName(java.lang.Integer conceptNameId)
                           throws DAOException

Specified by:

getConceptName in interface ConceptDAO

Returns:

The ConceptName matching the specified conceptNameId

Throws:

DAOException

See Also:

ConceptDAO.getConceptName(java.lang.Integer)

getConceptAnswer

public ConceptAnswer getConceptAnswer(java.lang.Integer conceptAnswerId)
                               throws DAOException

Specified by:

getConceptAnswer in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptAnswer(java.lang.Integer)

getAllConcepts

public java.util.List<Concept> getAllConcepts(java.lang.String sortBy,
                                              boolean asc,
                                              boolean includeRetired)
                                       throws DAOException

Specified by:

getAllConcepts in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getAllConcepts(java.lang.String, boolean, boolean)

saveDrug

public Drug saveDrug(Drug drug)
              throws DAOException

Specified by:

saveDrug in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveDrug(org.openmrs.Drug)

getDrug

public Drug getDrug(java.lang.Integer drugId)
             throws DAOException

Specified by:

getDrug in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getDrug(java.lang.Integer)

getDrugs

public java.util.List<Drug> getDrugs(java.lang.String drugName,
                                     Concept concept,
                                     boolean includeRetired)
                              throws DAOException

Description copied from interface: ConceptDAO

DAO for retrieving a list of drugs based on the following criteria

Specified by:

getDrugs in interface ConceptDAO

Returns:

List

Throws:

DAOException

See Also:

ConceptDAO.getDrugs(java.lang.String, org.openmrs.Concept, boolean)

getDrugs

public java.util.List<Drug> getDrugs(java.lang.String phrase)
                              throws DAOException

Specified by:

getDrugs in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getDrugs(java.lang.String)

getConceptClass

public ConceptClass getConceptClass(java.lang.Integer i)
                             throws DAOException

Specified by:

getConceptClass in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptClass(java.lang.Integer)

getConceptClasses

public java.util.List<ConceptClass> getConceptClasses(java.lang.String name)
                                               throws DAOException

Specified by:

getConceptClasses in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptClasses(java.lang.String)

getAllConceptClasses

public java.util.List<ConceptClass> getAllConceptClasses(boolean includeRetired)
                                                  throws DAOException

Specified by:

getAllConceptClasses in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getAllConceptClasses(boolean)

saveConceptClass

public ConceptClass saveConceptClass(ConceptClass cc)
                              throws DAOException

Specified by:

saveConceptClass in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConceptClass(org.openmrs.ConceptClass)

purgeConceptClass

public void purgeConceptClass(ConceptClass cc)
                       throws DAOException

Specified by:

purgeConceptClass in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.purgeConceptClass(org.openmrs.ConceptClass)

getConceptDatatype

public ConceptDatatype getConceptDatatype(java.lang.Integer i)

Specified by:

getConceptDatatype in interface ConceptDAO

See Also:

ConceptDAO.getConceptDatatype(java.lang.Integer)

getAllConceptDatatypes

public java.util.List<ConceptDatatype> getAllConceptDatatypes(boolean includeRetired)
                                                       throws DAOException

Specified by:

getAllConceptDatatypes in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getAllConceptDatatypes(boolean)

getConceptDatatypes

public java.util.List<ConceptDatatype> getConceptDatatypes(java.lang.String name)
                                                    throws DAOException

Specified by:

getConceptDatatypes in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptDatatypes(java.lang.String)

getConceptDatatypeByName

public ConceptDatatype getConceptDatatypeByName(java.lang.String name)
                                         throws DAOException

Specified by:

getConceptDatatypeByName in interface ConceptDAO

Returns:

the ConceptDatatype that matches name exactly or null if one does not exist.

Throws:

DAOException

See Also:

ConceptDAO.getConceptDatatypeByName(String)

saveConceptDatatype

public ConceptDatatype saveConceptDatatype(ConceptDatatype cd)
                                    throws DAOException

Specified by:

saveConceptDatatype in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConceptDatatype(org.openmrs.ConceptDatatype)

purgeConceptDatatype

public void purgeConceptDatatype(ConceptDatatype cd)
                          throws DAOException

Specified by:

purgeConceptDatatype in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.purgeConceptDatatype(org.openmrs.ConceptDatatype)

getConceptNumeric

public ConceptNumeric getConceptNumeric(java.lang.Integer i)

Specified by:

getConceptNumeric in interface ConceptDAO

See Also:

ConceptDAO.getConceptNumeric(java.lang.Integer)

getConcepts

public java.util.List<Concept> getConcepts(java.lang.String name,
                                           java.util.Locale loc,
                                           boolean searchOnPhrase,
                                           java.util.List<ConceptClass> classes,
                                           java.util.List<ConceptDatatype> datatypes)
                                    throws DAOException

Description copied from interface: ConceptDAO

Returns a list of concepts based on the search criteria

Specified by:

getConcepts in interface ConceptDAO

searchOnPhrase - This puts wildcard characters around the concept name search criteria

Returns:

List

Throws:

DAOException

See Also:

ConceptDAO.getConcepts(java.lang.String, java.util.Locale, boolean, java.util.List, java.util.List)

getConceptWords

public java.util.List<ConceptWord> getConceptWords(java.lang.String phrase,
                                                   java.util.List<java.util.Locale> locales,
                                                   boolean includeRetired,
                                                   java.util.List<ConceptClass> requireClasses,
                                                   java.util.List<ConceptClass> excludeClasses,
                                                   java.util.List<ConceptDatatype> requireDatatypes,
                                                   java.util.List<ConceptDatatype> excludeDatatypes,
                                                   Concept answersToConcept,
                                                   java.lang.Integer start,
                                                   java.lang.Integer size)
                                            throws DAOException

Specified by:

getConceptWords in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptWords(java.lang.String, java.util.List, boolean, java.util.List, java.util.List, java.util.List, java.util.List, org.openmrs.Concept, java.lang.Integer, java.lang.Integer)

getConceptsByAnswer

public java.util.List<Concept> getConceptsByAnswer(Concept concept)

gets questions for the given answer concept

Specified by:

getConceptsByAnswer in interface ConceptDAO

See Also:

ConceptDAO.getConceptsByAnswer(org.openmrs.Concept)

getPrevConcept

public Concept getPrevConcept(Concept c)

Specified by:

getPrevConcept in interface ConceptDAO

See Also:

ConceptDAO.getPrevConcept(org.openmrs.Concept)

getNextConcept

public Concept getNextConcept(Concept c)

Specified by:

getNextConcept in interface ConceptDAO

See Also:

ConceptDAO.getNextConcept(org.openmrs.Concept)

getConceptsWithDrugsInFormulary

public java.util.List<Concept> getConceptsWithDrugsInFormulary()

Specified by:

getConceptsWithDrugsInFormulary in interface ConceptDAO

See Also:

ConceptDAO.getConceptsWithDrugsInFormulary()

purgeDrug

public void purgeDrug(Drug drug)
               throws DAOException

Specified by:

purgeDrug in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.purgeDrug(org.openmrs.Drug)

updateConceptWord

public void updateConceptWord(Concept concept)
                       throws DAOException

Specified by:

updateConceptWord in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.updateConceptWord(org.openmrs.Concept)

saveConceptProposal

public ConceptProposal saveConceptProposal(ConceptProposal cp)
                                    throws DAOException

Specified by:

saveConceptProposal in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConceptProposal(org.openmrs.ConceptProposal)

purgeConceptProposal

public void purgeConceptProposal(ConceptProposal cp)
                          throws DAOException

Specified by:

purgeConceptProposal in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.purgeConceptProposal(org.openmrs.ConceptProposal)

getAllConceptProposals

public java.util.List<ConceptProposal> getAllConceptProposals(boolean includeCompleted)
                                                       throws DAOException

Specified by:

getAllConceptProposals in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getAllConceptProposals(boolean)

getConceptProposal

public ConceptProposal getConceptProposal(java.lang.Integer conceptProposalId)
                                   throws DAOException

Specified by:

getConceptProposal in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptProposal(java.lang.Integer)

getConceptProposals

public java.util.List<ConceptProposal> getConceptProposals(java.lang.String text)
                                                    throws DAOException

Specified by:

getConceptProposals in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptProposals(java.lang.String)

getProposedConcepts

public java.util.List<Concept> getProposedConcepts(java.lang.String text)
                                            throws DAOException

Specified by:

getProposedConcepts in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getProposedConcepts(java.lang.String)

getConceptSetsByConcept

public java.util.List<ConceptSet> getConceptSetsByConcept(Concept concept)

Specified by:

getConceptSetsByConcept in interface ConceptDAO

See Also:

ConceptDAO.getConceptSetsByConcept(org.openmrs.Concept)

getSetsContainingConcept

public java.util.List<ConceptSet> getSetsContainingConcept(Concept concept)

Specified by:

getSetsContainingConcept in interface ConceptDAO

See Also:

ConceptDAO.getSetsContainingConcept(org.openmrs.Concept)

updateConceptSetDerived

public void updateConceptSetDerived()
                             throws DAOException

Specified by:

updateConceptSetDerived in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.updateConceptSetDerived()

updateConceptSetDerived

public void updateConceptSetDerived(Concept concept)
                             throws DAOException

Specified by:

updateConceptSetDerived in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.updateConceptSetDerived(org.openmrs.Concept)

getLocalesOfConceptNames

public java.util.Set<java.util.Locale> getLocalesOfConceptNames()

Specified by:

getLocalesOfConceptNames in interface ConceptDAO

See Also:

ConceptDAO.getLocalesOfConceptNames()

getConceptNameTag

public ConceptNameTag getConceptNameTag(java.lang.Integer i)

Specified by:

getConceptNameTag in interface ConceptDAO

See Also:

ConceptDAO.getConceptNameTag(java.lang.Integer)

getConceptNameTagByName

public ConceptNameTag getConceptNameTagByName(java.lang.String name)

Specified by:

getConceptNameTagByName in interface ConceptDAO

See Also:

ConceptDAO.getConceptNameTagByName(java.lang.String)

getAllConceptNameTags

public java.util.List<ConceptNameTag> getAllConceptNameTags()

Specified by:

getAllConceptNameTags in interface ConceptDAO

See Also:

ConceptDAO.getAllConceptNameTags()

getConceptSource

public ConceptSource getConceptSource(java.lang.Integer conceptSourceId)

Specified by:

getConceptSource in interface ConceptDAO

See Also:

ConceptDAO.getConceptSource(java.lang.Integer)

getAllConceptSources

public java.util.List<ConceptSource> getAllConceptSources()

Specified by:

getAllConceptSources in interface ConceptDAO

See Also:

ConceptDAO.getAllConceptSources()

deleteConceptSource

public ConceptSource deleteConceptSource(ConceptSource cs)
                                  throws DAOException

Specified by:

deleteConceptSource in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.deleteConceptSource(org.openmrs.ConceptSource)

saveConceptSource

public ConceptSource saveConceptSource(ConceptSource conceptSource)
                                throws DAOException

Specified by:

saveConceptSource in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConceptSource(org.openmrs.ConceptSource)

saveConceptNameTag

public ConceptNameTag saveConceptNameTag(ConceptNameTag nameTag)

Specified by:

saveConceptNameTag in interface ConceptDAO

See Also:

ConceptDAO.saveConceptNameTag(org.openmrs.ConceptNameTag)

getMinConceptId

public java.lang.Integer getMinConceptId()

See Also:

ConceptDAO.getMaxConceptId()

getMaxConceptId

public java.lang.Integer getMaxConceptId()

Specified by:

getMaxConceptId in interface ConceptDAO

See Also:

ConceptDAO.getMaxConceptId()

conceptIterator

public java.util.Iterator<Concept> conceptIterator()

Specified by:

conceptIterator in interface ConceptDAO

See Also:

ConceptDAO.conceptIterator()

getConceptsByMapping

public java.util.List<Concept> getConceptsByMapping(java.lang.String code,
                                                    java.lang.String sourceName,
                                                    boolean includeRetired)

Specified by:

getConceptsByMapping in interface ConceptDAO

See Also:

org.openmrs.api.db.ConceptDAO#getConceptsByMapping(java.lang.String, java.lang.String)

getConceptByUuid

public Concept getConceptByUuid(java.lang.String uuid)

Description copied from interface: ConceptDAO

Auto generated method comment

Specified by:

getConceptByUuid in interface ConceptDAO

Returns:

See Also:

ConceptDAO.getConceptByUuid(java.lang.String)

getConceptClassByUuid

public ConceptClass getConceptClassByUuid(java.lang.String uuid)

Description copied from interface: ConceptDAO

Auto generated method comment

Specified by:

getConceptClassByUuid in interface ConceptDAO

Returns:

See Also:

ConceptDAO.getConceptClassByUuid(java.lang.String)

getConceptAnswerByUuid

public ConceptAnswer getConceptAnswerByUuid(java.lang.String uuid)

Specified by:

getConceptAnswerByUuid in interface ConceptDAO

getConceptNameByUuid

public ConceptName getConceptNameByUuid(java.lang.String uuid)

Specified by:

getConceptNameByUuid in interface ConceptDAO

getConceptSetByUuid

public ConceptSet getConceptSetByUuid(java.lang.String uuid)

Specified by:

getConceptSetByUuid in interface ConceptDAO

getConceptSetDerivedByUuid

public ConceptSetDerived getConceptSetDerivedByUuid(java.lang.String uuid)

Specified by:

getConceptSetDerivedByUuid in interface ConceptDAO

getConceptSourceByUuid

public ConceptSource getConceptSourceByUuid(java.lang.String uuid)

Specified by:

getConceptSourceByUuid in interface ConceptDAO

getConceptWordByUuid

public ConceptWord getConceptWordByUuid(java.lang.String uuid)

Specified by:

getConceptWordByUuid in interface ConceptDAO

getConceptDatatypeByUuid

public ConceptDatatype getConceptDatatypeByUuid(java.lang.String uuid)

Description copied from interface: ConceptDAO

Auto generated method comment

Specified by:

getConceptDatatypeByUuid in interface ConceptDAO

Returns:

See Also:

ConceptDAO.getConceptDatatypeByUuid(java.lang.String)

getConceptNumericByUuid

public ConceptNumeric getConceptNumericByUuid(java.lang.String uuid)

Description copied from interface: ConceptDAO

Auto generated method comment

Specified by:

getConceptNumericByUuid in interface ConceptDAO

Returns:

See Also:

ConceptDAO.getConceptNumericByUuid(java.lang.String)

getConceptProposalByUuid

public ConceptProposal getConceptProposalByUuid(java.lang.String uuid)

Description copied from interface: ConceptDAO

Auto generated method comment

Specified by:

getConceptProposalByUuid in interface ConceptDAO

Returns:

See Also:

ConceptDAO.getConceptProposalByUuid(java.lang.String)

getDrugByUuid

public Drug getDrugByUuid(java.lang.String uuid)

Description copied from interface: ConceptDAO

Auto generated method comment

Specified by:

getDrugByUuid in interface ConceptDAO

Returns:

See Also:

ConceptDAO.getDrugByUuid(java.lang.String)

getDrugIngredientByUuid

public DrugIngredient getDrugIngredientByUuid(java.lang.String uuid)

Specified by:

getDrugIngredientByUuid in interface ConceptDAO

getConceptUuids

public java.util.Map<java.lang.Integer,java.lang.String> getConceptUuids()

Specified by:

getConceptUuids in interface ConceptDAO

See Also:

ConceptDAO.getConceptUuids()

getConceptDescriptionByUuid

public ConceptDescription getConceptDescriptionByUuid(java.lang.String uuid)

Specified by:

getConceptDescriptionByUuid in interface ConceptDAO

See Also:

ConceptDAO.getConceptDescriptionByUuid(java.lang.String)

getConceptNameTagByUuid

public ConceptNameTag getConceptNameTagByUuid(java.lang.String uuid)

Specified by:

getConceptNameTagByUuid in interface ConceptDAO

See Also:

ConceptDAO.getConceptNameTagByUuid(java.lang.String)

getConceptMapsBySource

public java.util.List<ConceptMap> getConceptMapsBySource(ConceptSource conceptSource)
                                                  throws DAOException

Specified by:

getConceptMapsBySource in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptMapsBySource(ConceptSource)

getConceptSourceByName

public ConceptSource getConceptSourceByName(java.lang.String conceptSourceName)
                                     throws DAOException

Specified by:

getConceptSourceByName in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptSourceByName(java.lang.String)

getSavedConceptDatatype

public ConceptDatatype getSavedConceptDatatype(Concept concept)

Description copied from interface: ConceptDAO

Gets the value of conceptDatatype currently saved in the database for the given concept, bypassing any caches. This is used prior to saving an concept so that we can change the obs if need be

Specified by:

getSavedConceptDatatype in interface ConceptDAO

Parameters:

concept - for which the conceptDatatype should be fetched

Returns:

the conceptDatatype currently in the database for this concept

See Also:

ConceptDAO.getSavedConceptDatatype(org.openmrs.Concept)

getSavedConceptName

public ConceptName getSavedConceptName(ConceptName conceptName)

Description copied from interface: ConceptDAO

Gets the persisted copy of the conceptName currently saved in the database for the given conceptName, bypassing any caches. This is used prior to saving an concept so that we can change the obs if need be or avoid breaking any obs referencing it.

Specified by:

getSavedConceptName in interface ConceptDAO

Parameters:

conceptName - ConceptName to fetch from the database

Returns:

the persisted copy of the conceptName currently saved in the database for this conceptName

See Also:

ConceptDAO.getSavedConceptName(org.openmrs.ConceptName)

getConceptStopWords

public java.util.List<java.lang.String> getConceptStopWords(java.util.Locale locale)
                                                     throws DAOException

Specified by:

getConceptStopWords in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptStopWords(java.util.Locale)

saveConceptStopWord

public ConceptStopWord saveConceptStopWord(ConceptStopWord conceptStopWord)
                                    throws DAOException

Specified by:

saveConceptStopWord in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConceptStopWord(org.openmrs.ConceptStopWord)

deleteConceptStopWord

public void deleteConceptStopWord(java.lang.Integer conceptStopWordId)
                           throws DAOException

Specified by:

deleteConceptStopWord in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.deleteConceptStopWord(java.lang.Integer)

getAllConceptStopWords

public java.util.List<ConceptStopWord> getAllConceptStopWords()

Specified by:

getAllConceptStopWords in interface ConceptDAO

See Also:

ConceptDAO.getAllConceptStopWords()

getCountOfConceptWords

public java.lang.Long getCountOfConceptWords(java.lang.String phrase,
                                             java.util.List<java.util.Locale> locales,
                                             boolean includeRetired,
                                             java.util.List<ConceptClass> requireClasses,
                                             java.util.List<ConceptClass> excludeClasses,
                                             java.util.List<ConceptDatatype> requireDatatypes,
                                             java.util.List<ConceptDatatype> excludeDatatypes,
                                             Concept answersToConcept,
                                             boolean forUniqueConcepts)

Description copied from interface: ConceptDAO

Get the count of matching conceptWords

Specified by:

getCountOfConceptWords in interface ConceptDAO

Parameters:

phrase - text to search on

locales - the locales to restrict to

includeRetired - Specifies whether to include retired concepts

requireClasses - List to restrict to

excludeClasses - List to leave out of results

requireDatatypes - List to restrict to

excludeDatatypes - List to leave out of results

answersToConcept - all results will be a possible answer to this concept

forUniqueConcepts - Specifies if conceptWords that are associated to multiple conceptWords should be counted one or more times.

See Also:

org.openmrs.api.db.ConceptDAO#getCountOfConceptWords(String, List, boolean, List, List, List, List, Concept)

getCountOfDrugs

public java.lang.Long getCountOfDrugs(java.lang.String drugName,
                                      Concept concept,
                                      boolean searchOnPhrase,
                                      boolean searchDrugConceptNames,
                                      boolean includeRetired)
                               throws DAOException

Specified by:

getCountOfDrugs in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptService.getCountOfDrugs(String, Concept, boolean, boolean, boolean)

getDrugs

public java.util.List<Drug> getDrugs(java.lang.String drugName,
                                     Concept concept,
                                     boolean searchOnPhrase,
                                     boolean searchDrugConceptNames,
                                     boolean includeRetired,
                                     java.lang.Integer start,
                                     java.lang.Integer length)
                              throws DAOException

Specified by:

getDrugs in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptService.getDrugs(String, Concept, boolean, boolean, boolean, Integer, Integer)

getConcepts

public java.util.List<ConceptSearchResult> getConcepts(java.lang.String phrase,
                                                       java.util.List<java.util.Locale> locales,
                                                       boolean includeRetired,
                                                       java.util.List<ConceptClass> requireClasses,
                                                       java.util.List<ConceptClass> excludeClasses,
                                                       java.util.List<ConceptDatatype> requireDatatypes,
                                                       java.util.List<ConceptDatatype> excludeDatatypes,
                                                       Concept answersToConcept,
                                                       java.lang.Integer start,
                                                       java.lang.Integer size)
                                                throws DAOException

Specified by:

getConcepts in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConcepts(String, List, boolean, List, List, List, List, Concept, Integer, Integer)

weighConceptWord

public java.lang.Double weighConceptWord(ConceptWord word)

Description copied from interface: ConceptDAO

Computes and returns the weight of a conceptWord. The weight is computed independent of locale and any phrase

Specified by:

weighConceptWord in interface ConceptDAO

Parameters:

word - the word for which to compute the weight

Returns:

the weight of the word

See Also:

ConceptDAO.weighConceptWord(ConceptWord)

getConceptMapTypes

public java.util.List<ConceptMapType> getConceptMapTypes(boolean includeRetired,
                                                         boolean includeHidden)
                                                  throws DAOException

Specified by:

getConceptMapTypes in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptMapTypes(boolean, boolean)

getConceptMapType

public ConceptMapType getConceptMapType(java.lang.Integer conceptMapTypeId)
                                 throws DAOException

Specified by:

getConceptMapType in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptMapType(java.lang.Integer)

getConceptMapTypeByUuid

public ConceptMapType getConceptMapTypeByUuid(java.lang.String uuid)
                                       throws DAOException

Specified by:

getConceptMapTypeByUuid in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptMapTypeByUuid(java.lang.String)

getConceptMapTypeByName

public ConceptMapType getConceptMapTypeByName(java.lang.String name)
                                       throws DAOException

Specified by:

getConceptMapTypeByName in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptMapTypeByName(java.lang.String)

saveConceptMapType

public ConceptMapType saveConceptMapType(ConceptMapType conceptMapType)
                                  throws DAOException

Specified by:

saveConceptMapType in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConceptMapType(org.openmrs.ConceptMapType)

deleteConceptMapType

public void deleteConceptMapType(ConceptMapType conceptMapType)
                          throws DAOException

Specified by:

deleteConceptMapType in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.deleteConceptMapType(org.openmrs.ConceptMapType)

getConceptReferenceTerms

public java.util.List<ConceptReferenceTerm> getConceptReferenceTerms(boolean includeRetired)
                                                              throws DAOException

Specified by:

getConceptReferenceTerms in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptReferenceTerms(boolean)

getConceptReferenceTerm

public ConceptReferenceTerm getConceptReferenceTerm(java.lang.Integer conceptReferenceTermId)
                                             throws DAOException

Specified by:

getConceptReferenceTerm in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptReferenceTerm(java.lang.Integer)

getConceptReferenceTermByUuid

public ConceptReferenceTerm getConceptReferenceTermByUuid(java.lang.String uuid)
                                                   throws DAOException

Specified by:

getConceptReferenceTermByUuid in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptReferenceTermByUuid(java.lang.String)

getConceptReferenceTermsBySource

public java.util.List<ConceptReferenceTerm> getConceptReferenceTermsBySource(ConceptSource conceptSource)
                                                                      throws DAOException

Specified by:

getConceptReferenceTermsBySource in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptReferenceTermsBySource(ConceptSource)

getConceptReferenceTermByName

public ConceptReferenceTerm getConceptReferenceTermByName(java.lang.String name,
                                                          ConceptSource conceptSource)
                                                   throws DAOException

Specified by:

getConceptReferenceTermByName in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptReferenceTermByName(java.lang.String, org.openmrs.ConceptSource)

getConceptReferenceTermByCode

public ConceptReferenceTerm getConceptReferenceTermByCode(java.lang.String code,
                                                          ConceptSource conceptSource)
                                                   throws DAOException

Specified by:

getConceptReferenceTermByCode in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getConceptReferenceTermByCode(java.lang.String, org.openmrs.ConceptSource)

saveConceptReferenceTerm

public ConceptReferenceTerm saveConceptReferenceTerm(ConceptReferenceTerm conceptReferenceTerm)
                                              throws DAOException

Specified by:

saveConceptReferenceTerm in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.saveConceptReferenceTerm(org.openmrs.ConceptReferenceTerm)

deleteConceptReferenceTerm

public void deleteConceptReferenceTerm(ConceptReferenceTerm conceptReferenceTerm)
                                throws DAOException

Specified by:

deleteConceptReferenceTerm in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.deleteConceptReferenceTerm(org.openmrs.ConceptReferenceTerm)

getCountOfConceptReferenceTerms

public java.lang.Long getCountOfConceptReferenceTerms(java.lang.String query,
                                                      ConceptSource conceptSource,
                                                      boolean includeRetired)
                                               throws DAOException

Specified by:

getCountOfConceptReferenceTerms in interface ConceptDAO

Throws:

DAOException

See Also:

org.openmrs.api.db.ConceptDAO#getCountOfConceptReferenceTerms(java.lang.String, boolean)

getConceptReferenceTerms

public java.util.List<ConceptReferenceTerm> getConceptReferenceTerms(java.lang.String query,
                                                                     ConceptSource conceptSource,
                                                                     java.lang.Integer start,
                                                                     java.lang.Integer length,
                                                                     boolean includeRetired)
                                                              throws APIException

Specified by:

getConceptReferenceTerms in interface ConceptDAO

Throws:

APIException

See Also:

ConceptDAO.getConceptReferenceTerms(String, ConceptSource, Integer, Integer, boolean)

getReferenceTermMappingsTo

public java.util.List<ConceptReferenceTermMap> getReferenceTermMappingsTo(ConceptReferenceTerm term)
                                                                   throws DAOException

Specified by:

getReferenceTermMappingsTo in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getReferenceTermMappingsTo(ConceptReferenceTerm)

isConceptReferenceTermInUse

public boolean isConceptReferenceTermInUse(ConceptReferenceTerm term)
                                    throws DAOException

Description copied from interface: ConceptDAO

Checks if there are any ConceptReferenceTermMaps or ConceptMaps using the specified term

Specified by:

isConceptReferenceTermInUse in interface ConceptDAO

Returns:

Throws:

DAOException

See Also:

ConceptDAO.isConceptReferenceTermInUse(org.openmrs.ConceptReferenceTerm)

isConceptMapTypeInUse

public boolean isConceptMapTypeInUse(ConceptMapType mapType)
                              throws DAOException

Description copied from interface: ConceptDAO

Checks if there are any ConceptReferenceTermMaps or ConceptMaps using the specified mapType

Specified by:

isConceptMapTypeInUse in interface ConceptDAO

Returns:

Throws:

DAOException

See Also:

ConceptDAO.isConceptMapTypeInUse(org.openmrs.ConceptMapType)

getConceptsByName

public java.util.List<Concept> getConceptsByName(java.lang.String name,
                                                 java.util.Locale locale,
                                                 java.lang.Boolean exactLocale)

Specified by:

getConceptsByName in interface ConceptDAO

See Also:

ConceptDAO.getConceptsByName(java.lang.String, java.util.Locale, java.lang.Boolean)

getDefaultConceptMapType

public ConceptMapType getDefaultConceptMapType()
                                        throws DAOException

Description copied from interface: ConceptDAO

It is in the DAO, because it must be done in the MANUAL flush mode to prevent premature flushes in ConceptService.saveConcept(Concept). It will be removed in 1.10 when we have a better way to manage flush modes.

Specified by:

getDefaultConceptMapType in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getDefaultConceptMapType()

getDrugs

public java.util.List<Drug> getDrugs(java.lang.String searchPhrase,
                                     java.util.Locale locale,
                                     boolean exactLocale,
                                     boolean includeRetired)

Specified by:

getDrugs in interface ConceptDAO

See Also:

ConceptDAO.getDrugs(String, java.util.Locale, boolean, boolean)

getDrugsByMapping

public java.util.List<Drug> getDrugsByMapping(java.lang.String code,
                                              ConceptSource conceptSource,
                                              java.util.Collection<ConceptMapType> withAnyOfTheseTypes,
                                              boolean includeRetired)
                                       throws DAOException

Specified by:

getDrugsByMapping in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getDrugsByMapping(String, ConceptSource, Collection, boolean)

getDrugByMapping

public Drug getDrugByMapping(java.lang.String code,
                             ConceptSource conceptSource,
                             java.util.Collection<ConceptMapType> withAnyOfTheseTypesOrOrderOfPreference)
                      throws DAOException

Specified by:

getDrugByMapping in interface ConceptDAO

Throws:

DAOException

See Also:

ConceptDAO.getDrugs(java.lang.String, org.openmrs.Concept, boolean)